PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G073500.1
Common NameB456_004G073500, LOC105793553
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 172aa    MW: 19409.4 Da    PI: 6.2299
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G073500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000183355123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C  C++ F++   L  H++ H
  Gorai.004G073500.1 33 YECVFCKRGFTTAQALGGHMNIH 55
                        99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.6E-52959IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.9E-72959No hitNo description
PROSITE profilePS5015710.993360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEANHLEDSK SSSEETDKSE QIIDDMRAGR RSYECVFCKR GFTTAQALGG HMNIHRKDRA  60
KSRPSSVPIV SLSGNKADDK NYPSFRPYSY PPIRSYQPHY SIAPEVHVSY QAFLPVSGWG  120
FTLPPHTAQL FVDNSKHLNP FGEDDHENKK ADGYNDKEDE LDLELRLGHD P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477904.11e-127PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A0D2R0K31e-127A0A0D2R0K3_G
STRINGPOPTR_0002s04250.19e-51(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15373717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.18e-14C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]